criticalvalue

Robbins and Pitman Algorithm to calculate the criticalvalue given eigenvalue vector and alpha level.

1-alpha quantile

A shortcut procedure is proposed to implement closed testing for large-scale multiple testings, especially with the global test. This shortcut is asymptotically equivalent to closed testing and post hoc. Users could detect any possible sets of features or pathways with family-wise error rate controlled. The global test is powerful to detect associations between a group of features and an outcome of interest.

Ningning Xu

ctgt

Closed Testing with Globaltest for Pathway Analysis

1-alpha quantile function

<dl> <dt>lam</dt>
<dd>The numeric vector with eigenvalues as elements.</dd> <dt>alpha</dt>
<dd>The type I error rate allowed. The default is 0.05.</dd></dl>

Arguments

Ningning Xu
Maintainer: Ningning Xu &lt;n.xu@lumc.nl; xu15263142750@gmail.com&gt;

Author

The 1-alpha quantile of globaltest — 1-alpha quantile

<dl>

 <dt>lam</dt>
<dd>The numeric vector with eigenvalues as elements.</dd>

 <dt>alpha</dt>
<dd>The type I error rate allowed. The default is 0.05.</dd>

</dl>

1-alpha quantile: The 1-alpha quantile of globaltest

Description

Usage

Value

Arguments

Author

References